This is the complete list of members for
gkarrays::gkArrays, including all inherited members.
| convertPposToQpos(uintSA i) | gkarrays::gkArrays | |
| getEndPosOfTagNum(uint tag_num) | gkarrays::gkArrays | |
| getGkCFA(uintSA i) | gkarrays::gkArrays | |
| getGkCFALength() | gkarrays::gkArrays | |
| getGkISA(uintSA i) | gkarrays::gkArrays | |
| getGkSA(uintSA i) | gkarrays::gkArrays | |
| getGkSALength() | gkarrays::gkArrays | |
| getNbPposition(uintSA nb_reads) | gkarrays::gkArrays | |
| getNbTags() | gkarrays::gkArrays | |
| getNbTagsWithFactor(uint tag_num, uint pos_factor, bool multiplicity=0) | gkarrays::gkArrays | |
| getNbThreads() | gkarrays::gkArrays | |
| getPair(uint i) | gkarrays::gkArrays | |
| getPosInCommon(uint tag_num, uint pos_factor) | gkarrays::gkArrays | |
| getReads() | gkarrays::gkArrays | |
| getStartPosOfTagNum(uint tag_num) | gkarrays::gkArrays | |
| getStartQPosOfTagNum(uint tag_num) | gkarrays::gkArrays | |
| getSupport(uint i) | gkarrays::gkArrays | |
| getSupportLength(uint i=0) | gkarrays::gkArrays | |
| getTag(uint i) | gkarrays::gkArrays | |
| getTagFactor(uint i, uint p, uint l) | gkarrays::gkArrays | |
| getTagLength(uint i=0) | gkarrays::gkArrays | |
| getTagNum(uintSA pos) | gkarrays::gkArrays | |
| getTagNumAndPosFromAbsolutePos(uintSA pos) | gkarrays::gkArrays | |
| getTagNumWithFactor(uint tag_num, uint pos_factor) | gkarrays::gkArrays | |
| getTagsWithFactor(uint tag_num, uint pos_factor) | gkarrays::gkArrays | |
| getTagsWithFactor(char *factor, uint factor_length, uint &nb_fact) | gkarrays::gkArrays | |
| getTextFactor(uintSA pos, uint length) | gkarrays::gkArrays | |
| getThreshold() | gkarrays::gkArrays | |
| getType() | gkarrays::gkArrays | |
| gkArrays(char *tags_file, uint threshold, bool use_bitvector=false, uint tag_length=0, bool stranded=false, uint nb_threads=1) | gkarrays::gkArrays | |
| gkArrays(char *tags_file1, char *tags_file2, uint threshold, bool use_bitvector=false, uint tag_length=0, bool stranded=false, uint nb_threads=1) | gkarrays::gkArrays | |
| isDiscarded(uint actual_length, uint theoretical_length=0, uint k=0) | gkarrays::gkArrays | [static] |
| isLarge() | gkarrays::gkArrays | |
| isPposition(uintSA pos) | gkarrays::gkArrays | |
| isStranded() | gkarrays::gkArrays | |
| isTheFirstMemberOfPair(uint i) | gkarrays::gkArrays | |
1.7.6.1
