Gk-arrays
Efficient read indexing
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gkarrays
singleReadIterator
gkarrays::singleReadIterator Member List
This is the complete list of members for
gkarrays::singleReadIterator
, including all inherited members.
getLength
()
gkarrays::singleReadIterator
[virtual]
getName
()
gkarrays::singleReadIterator
[virtual]
getQuality
()
gkarrays::singleReadIterator
[virtual]
getReadNumber
()
gkarrays::singleReadIterator
[virtual]
getSequence
()
gkarrays::singleReadIterator
[virtual]
isDiscarded
()
gkarrays::singleReadIterator
isFinished
()
gkarrays::singleReadIterator
[virtual]
operator*
()
gkarrays::singleReadIterator
[virtual]
operator++
()
gkarrays::singleReadIterator
[virtual]
operator++
(int)
gkarrays::singleReadIterator
[virtual]
printWarnings
()
gkarrays::readIterator
setAutoDiscard
(bool value)
gkarrays::singleReadIterator
setPrintWarnings
(bool isVisible)
gkarrays::readIterator
singleReadIterator
(char *filename, uint k=0, uint length=0, bool printWarnings=false, bool autoDiscard=true, bool autoFirstIteration=true)
gkarrays::singleReadIterator
singleReadIterator
(kseq_t *seq, uint k=0, uint length=0)
gkarrays::singleReadIterator
singleReadIterator
(const singleReadIterator &mit)
gkarrays::singleReadIterator
~readIterator
()
gkarrays::readIterator
[inline, virtual]
~singleReadIterator
()
gkarrays::singleReadIterator
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