gkarrays::GkArraysBuilder Class Reference

List of all members.

Public Member Functions
	GkArraysBuilder (unsigned char *cr, uintSA length, int k, gkArrays *gk, array_type type, uint nb_threads)

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Constructor & Destructor Documentation

gkarrays::GkArraysBuilder::GkArraysBuilder	(	unsigned char *	cr,
		uintSA	length,
		int	k,
		gkArrays *	gk,
		array_type	type,
		uint	nb_threads
	)

Build the tables of the GkArrays for the input data.

Parameters:

cr,:	the concatenation of reads
length,:	length of the read concatenation
k,:	length of the k-mers
gk,:	gkArrays to be used for computing gkIFA
type,:	the type of array to build
nb_threads,:	the number of threads that can be used

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The documentation for this class was generated from the following files:

• gkArraysBuilder.h
• gkArraysBuilder.cpp