gkarrays::GkSABuilder Class Reference

List of all members.

Public Member Functions
void	build (SolArray *values, unsigned char *cr, uintSA length, int k, gkArrays *gk, int threshold_sort, array_type type, uint nb_threads)
SolArray *	getGkSA ()

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Member Function Documentation

void gkarrays::GkSABuilder::build	(	SolArray *	values,
		unsigned char *	cr,
		uintSA	length,
		int	k,
		gkArrays *	gk,
		int	threshold_sort,
		array_type	type,
		uint	nb_threads
	)

Build a GkSA

Parameters:

values,:	array storing the integer values of the k-mers
cr,:	the concatenation of reads
length,:	length of the read concatenation
k,:	length of the k-mers
gk,:	gkArrays to be used for computing gkIFA
threshold_sort,:	threshold below which an insertion sort is performed rather than a quicksort
type,:	the type of SolArray to build
nb_threads,:	the number of threads that can be used

SolArray * gkarrays::GkSABuilder::getGkSA

(

)

Returns:

the last GkSA that has been built.

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The documentation for this class was generated from the following files:

• gkSABuilder.h
• gkSABuilder.cpp