|
| [23] | Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r (Augustin Boudry, Sasha Darmon, Nicolas Duployez, Martin Figeac, Sandrine Geffroy, Maxime Bucci, Karine Celli-Lebras, Matthieu Duchmann, Romane Joudinaud, Laurène Fenwarth, Olivier Nibourel, Laure Goursaud, Raphael Itzykson, Hervé Dombret, Mathilde Hunault, Claude Preudhomme and Mikaël Salson), In BMC Bioinformatics, volume 23, 2022. |
| [22] | Sequence Indexing (Lecroq, Thierry and Salson, Mikaël), Chapter in From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics, John Wiley & Sons, Inc. Hoboken, NJ, USA, 2022. |
| [21] | From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics (Chateau, Annie and Salson, Mikaël), John Wiley & Sons, 2022. |
| [20] | One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic Leukemia (P. Villarese, C. Abdo, M. Bertrand, F. Thonier, M. Giraud, M. Salson and E. Macintyre), Chapter in Immunogenetics (Langerak A.W., ed.), Methods in molecular biology (Clifton, NJ), volume 2453, 2022. |
| [19] | Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic Leukemia (A. Langlois de Septenville, M. Boudjoghra, C. Bravetti, M. Armand, M. Salson, M. Giraud and F. Davi), Chapter in Immunogenetics (Langerak A.W., ed.), Methods in molecular biology (Clifton, NJ), volume 2453, 2022. |
|
| [18] | Data structures based on k-mers for querying large collections of sequencing data sets (C. Marchet, C. Boucher, S. J. Puglisi, P. Medvedev, M. Salson and R. Chikhi), In Genome Research, Cold Spring Harbor Lab, volume 31, 2021. |
|
| [17] | REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets (C. Marchet, Z. Iqbal, D. Gautheret, M. Salson and R. Chikhi), In Bioinformatics, volume 36, 2020. |
|
| [16] | Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study (Brüggemann, Monika, Kotrova, Michaela, Knecht, Henrik, Bartram, Jack, Boudjogrha, Myriam, Bystry, Vojtech, Fazio, Grazia, Froňková, Eva, Giraud, Mathieu, Grioni, Andrea, Hancock, Jeremy, Herrmann, Dietrich, Jimenez, Cristina, Krejci, Adam, Moppett, John, Reigl, Tomas, Salson, Mikaël, Scheijen, Blanca, Schwarz, Martin, Songia, Simona, Svaton, Michael, Van Dongen, Jacques J. M., Villarese, Patrick, Wakeman, Stephanie, Wright, Gary, Cazzaniga, Giovanni, Davi, Frédéric, García-Sanz, Ramón, Davi, David, Groenen, Patricia, Hummel, Michael, Macintyre, Elizabeth, Stamatopoulos, Kostas C, Pott, Christiane, Trka, Jan, Darzentas, Nikos and Langerak, Anton), In Leukemia, 2019. |
|
| [15] | Indexing labeled sequences (Rocher, Tatiana, Giraud, Mathieu and Salson, Mikaël), In PeerJ CS, volume 4, 2018. |
|
| [14] | High-throughput sequencing in acute lymphoblastic leukemia: Follow-up of minimal residual disease and emergence of new clones (Salson, Mikaël, Giraud, Mathieu, Caillault, Aurélie, Grardel, Nathalie, Duployez, Nicolas, Ferret, Yann, Duez, Marc, Herbert, Ryan, Rocher, Tatiana, Sebda, Shéhérazade, Quief, Sabine,, Villenet, Céline, Figeac, Martin and Preudhomme, Claude), In Leukemia Research, volume 53, 2017. |
| [13] | SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines (Audoux, Jérôme, Salson, Mikaël, Grosset, Christophe F., Beaumeunier, Sacha, Holder, Jean-Marc, Commes, Thérèse and Philippe, Nicolas), In BMC Bioinformatics, volume 18, 2017. |
| [12] | DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition (Audoux, Jérôme, Philippe, Nicolas, Chikhi, Rayan, Salson, Mikaël, Gallopin, Mélina, Gabriel, Marc, Le Coz, Jérémy, Drouineau, Émilie, Commes, Thérèse and Gautheret, Daniel), In Genome Biology, volume 18, 2017. |
|
| [11] | Approximate search of short patterns with high error rates using the 01∗0 lossless seeds (C. Vroland, M. Salson, S. Bini and H. Touzet), In Journal of Discrete Algorithms, volume 37, 2016. |
| [10] | Efficient dynamic range minimum query (Heliou, Alice, Léonard, Martine, Mouchard, Laurent and Salson, Mikaël), In Theor. Comput. Sci., 2016. |
| [9] | Multi-loci diagnosis of acute lymphoblastic leukaemia with high-throughput sequencing and bioinformatics analysis (Y. Ferret, A. Caillault, S. Sebda, M. Duez, N. Gradel, N. Duployez, C. Villenet, M. Figeac, C. Preudhomme, M. Salson and M. Giraud), In British J. of Haematology, 2016. |
| [8] | Vidjil: A web platform for analysis of high-throughput repertoire sequencing (Marc Duez, Mathieu Giraud, Ryan Herbert, Tatiana Rocher, Mikaël Salson and Florian Thonier), In PLOS One, volume 11, 2016. |
|
| [7] | The predictive strength of next-generation sequencing MRD detection for relapse compared with current methods in childhood ALL (Kotrova, Michaela, Muzikova, Katerina, Mejstrikova, Ester, Novakova, Michaela, Bakardjieva-Mihaylova, Violeta, Fiser, Karel, Stuchly, Jan, Giraud, Mathieu, Salson, Mikaël, Pott, Christiane, Brüggemann, Monika, Füllgrabe, Marc, Stary, Jan, Trka, Jan and Fronkova, Eva), In Blood, American Society of Hematology, volume 126, 2015. |
|
| [6] | Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing (Giraud, Mathieu, Salson, Mikaël, Duez, Marc, Villenet, Céline, Quief, Sabine, Caillault, Aurélie, Grardel, Nathalie, Roumier, Christophe, Preudhomme, Claude and Figeac, Martin), In BMC Genomics, volume 15, 2014. |
|
| [5] | CRAC: an integrated approach to the analysis of RNA-seq reads (N. Philippe, M. Salson, T. Commes and É. Rivals), In Genome Biology, volume 14, 2013. |
|
| [4] | Querying large read collections in main memory: a versatile data structure (N. Philippe, M. Salson, T. Lecroq, M. Léonard, T. Commes and É. Rivals), In BMC Bioinformatics, 2011. |
| [3] | On the number of elements to reorder when updating a suffix array (M. Léonard, L. Mouchard and M. Salson), In Journal of Discrete Algorithms, 2011. |
|
| [2] | Dynamic Extended Suffix Arrays (M. Salson, T. Lecroq, M. Léonard and L. Mouchard), In Journal of Discrete Algorithms, volume 8, 2010. |
|
| [1] | A Four-Stage Algorithm for Updating a Burrows-Wheeler Transform (M. Salson, T. Lecroq, M. Léonard and L. Mouchard), In Theor. Comput. Sci., volume 410, 2009. |
